Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSISISYSTTYSGWTVADYLADWSAYFGDVNHRPGQVVDGSNTGGFNPGPFDGSQYALKSTASDAAFIAGGDLHYTLFSNPSHTLWGKLDSIALGDTLTGGASSGGYALDSQEVSFSNLGLDSPIAQGRDGTVHKVVYGLMSGDSSALQGQIDALLKAVDPSLSINSTFDQLAAAGVAHATPAAAAAEVGVVGVQELPHDLALAA
3W8M Chain:A ((3-186))
MSISISYSTTYSGWTVADYLADWSAYFGDVNHRPGQVVDGSNTGGFNPGPFDGSQYALKSTASDAAFIAGGDLHYTLFSNPSHTLWGKLDSIALGDTLTGGASSGGYALDSQEVSFSNLGLDSPIAQGRDGTVHKVVYGLMSGDSSALQGQIDALLKAVDPSLSINSTFDQLAAAGVAHATPAA---------------------
General information:
TITO was launched using:
RESULT:
Template:
3W8M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -115653 for 1495 contacts (-77.4/contact) +
2D Compatibility (PS) -20270 + (NN) -14885 + (LL) 1972
1D Compatibility (HY) -21600 + (ID) 9200
Total energy: -179636.0 ( -120.16 by residue)
QMean score : 0.553
(partial model without unconserved sides chains):
PDB file :
Tito_3W8M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3W8M-query.scw
PDB file :
Tito_Scwrl_3W8M.pdb
: