Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMDINEIREYLPHRYPFLLVDRVVELDIEGKRIRAYKNVSINEPFFNGHFPEHPIMPGVLIIEAMAQAAGILGFKMLDVKPADGTLYYFVGSDKLRFRQPVLPGDQLQLHAKFISVKRSIWKFDCHATVDDKPVCSAEIICAERKL
1U1Z Chain:A ((23-165))
--DINEIREYLPHRYPFLLVDRVVELDIEGKRIRAYKNVSINEPFFNGHFPEHPIMPGVLIIEAMAQAAGILGFKMLDVKP---TLYYFVGSDKLRFRQPVLPGDQLQLHAKFISVKRSIWKFDCHATVDDKPVCSAEIICAERK-
General information:
TITO was launched using:
RESULT:
Template:
1U1Z.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -118901 for 1043 contacts (-114.0/contact) +
2D Compatibility (PS) -14739 + (NN) -3726 + (LL) 488
1D Compatibility (HY) -22800 + (ID) 7000
Total energy: -166678.0 ( -159.81 by residue)
QMean score : 0.526
(partial model without unconserved sides chains):
PDB file :
Tito_1U1Z.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1U1Z-query.scw
PDB file :
Tito_Scwrl_1U1Z.pdb
: