Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRVILLGAPGAGKGTQARFITEKFGIPQISTGDMLRAAVKAGSPLGQQVKGVMDSGGLVSDDIIIALIKERITEADCAKGFLFDGFPRTIPQAEALKDAGVTIDHVVEIAVDDEEIVSRIAGRRVHPASGRVYHTEHNPPKVAGKDDVTGEELIQREDDKEETVRHRLSVYHSQTKPLVDFYQKLSAAEGTPKYHSIAGVGSVEQITAKVLSALS
4NP6 Chain:A ((5-217))
-RIILLGAPGAGKGTQAQFIMEKFGIPQISTGDMLRAAIKAGTELGKQAKAVIDAGQLVSDDIILGLIKERIAQADCEKGFLLDGFPRTIPQADGLKEMGINVDYVIEFDVADDVIVERMAGRRAHLPSGRTYHVVYNPPKVEGKDDVTGEDLVIREDDKEETVRARLNVYHTQTAPLIEYYGK-EAAAGKTQYLKFDGTKQVSEVSADIAKALA
General information:
TITO was launched using:
RESULT:
Template:
4NP6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -80354 for 1530 contacts (-52.5/contact) +
2D Compatibility (PS) -23647 + (NN) -13220 + (LL) 384
1D Compatibility (HY) -21200 + (ID) 6950
Total energy: -144987.0 ( -94.76 by residue)
QMean score : 0.647
(partial model without unconserved sides chains):
PDB file :
Tito_4NP6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4NP6-query.scw
PDB file :
Tito_Scwrl_4NP6.pdb
: