Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSYSKIPAGKDLPNDIYVAIEIPANHAPIKYEIDKDTDCLFVDRFMATPMFYPANYGFIPNTLADDGDPLDVLVVTPYPVAPGSVIRARPVGVLHMTDEAGGDAKLIAVPHDKLSVLYKDVKEYTDLPALLLEQIKHFFENYKDLEKGKWVKVEGWGNADAARAEITKAVAAFQK
4XEL Chain:A ((10-183))
-SYSKIPAGKDLPNDIYVAIEIPANHAPIKYEIDKDTDCLFVDRFMATPMFYPANYGFIPNTLADDGDPLDVLVVTPYPVAPGSVIRARPVGVLHMTDEAGGDAKLIAVPHDKLSVLYKDVKEYTDLPALLLEQIKHFFENYKDLEKG--VKVEGWGNADAARAEITKAVAAFQK
General information:
TITO was launched using:
RESULT:
Template:
4XEL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -83329 for 1343 contacts (-62.0/contact) +
2D Compatibility (PS) -19224 + (NN) -14346 + (LL) 428
1D Compatibility (HY) -24400 + (ID) 8600
Total energy: -149471.0 ( -111.30 by residue)
QMean score : 0.675
(partial model without unconserved sides chains):
PDB file :
Tito_4XEL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4XEL-query.scw
PDB file :
Tito_Scwrl_4XEL.pdb
: