Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSSTIHPLPSFGLGTFRLTGQVVVDSVRSALELGYRAIDTAQIYGNEADIGRAIAESGVPRSELFLTTKVWVDNYAREKLLASLRESLEKLRTDRLDLVLIHWPAPGNGVELGEYMAALAEAKSLGLTRRIGVSNFNIELTRQAIAAVGAGEISTNQIELSPYLQNRALTAYLEEQGIAVTSYMTLAYGKVLKDPTLAGIAARHRATVAQVALAWAMQLGYAVIPSSTRRE-NLASNLLARDLRLDAEDMARIAGLER-NGREVSPQGLAPAWD |
3UP8 Chain:A ((27-297)) | VSSNGANIPALGFGTFRMSGAEVLRILPQALKLGFRHVDTAQIYGNEAEVGEAIQKSGIPRADVFLTTKVWVDNYRHDAFIASVDESLRKLRTDHVDLLLLHW--PGSDVPMAERIGALNEVRNAGKVRHIGISNFNTTQMEEA-ARLSDAPIATNQVEYHPYLDQTKVLQTARRLGMSLTSYYAMANGKVPADPLLTEIGGRHGKTAAQVALRWLVQQQDVIVLSKTATEARLKENFAIFDFALTREEMAAVRELARPNGRIVNPQGLAPEWD |
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General information:
TITO was launched using:
| RESULT:
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Template: 3UP8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -132373 for 2356 contacts (-56.2/contact) +
2D Compatibility (PS) -29616 + (NN) -16381 + (LL) 208
1D Compatibility (HY) -23600 + (ID) 6450
Total energy: -208212.0 ( -88.38 by residue)
QMean score : 0.503
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