Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MALTNEDIINAVSEMSVMQVVELIKAMEEKFGVTAAAATVAAAGPAAAAAEEQTEFTIVLAEAGDKKVNVIKVVRELTGLGLKEAKAVVDGAPGVVKEGASKEEAEAAKKALEEAGAKVELK
1RQU Chain:A ((1-120))
-SITKDQIIEAVAAMSVMDVVELISAMEEKFGVSAAAAVAVAA-GPVEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALEEAGAEVEVK
General information:
TITO was launched using:
RESULT:
Template:
1RQU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -26288 for 681 contacts (-38.6/contact) +
2D Compatibility (PS) -12941 + (NN) -2722 + (LL) 36
1D Compatibility (HY) -10400 + (ID) 3850
Total energy: -56165.0 ( -82.47 by residue)
QMean score : 0.554
(partial model without unconserved sides chains):
PDB file :
Tito_1RQU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RQU-query.scw
PDB file :
Tito_Scwrl_1RQU.pdb
: