Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MQLKDKVIIITGGCQGLGRAMGEYLAGKGARLALVDLNRERLDEAVAACKAAGGDARAYV-CNVADEEQVTHMVAQVASDFGAINGLVNNAGILRDGLTIKVKDGQLSKMSLAQWQSVIDVNLTGVFLCTREVAAKMIELKNEGAIVNISSIS-RAGNMGQANYSAAKAGVAADTVVWAKELARYGIRVAGVAPGFIETEMTAGMKPEALEKMTAGIPLKRMGKPVEIAHSVAYIF----ENDYYTGRVLELDGGLRL |
4NBU Chain:A ((10-250)) | -RLQDKVAIITGAANGIGLEAARVFMKEGAKVVIADFNEAAGKEAVEANPGV-----VFIRVDVSDRESVHRLVENVAERFGKIDILINNAGITRDSM--------LSKMTVDQFQQVINVNLTGVFHCTQAVLPYMAE-QGKGKIINTSSVTGTYGNVGQTNYAAAKAGVIGMTKTWAKELARKGINVNAVAPGFTETAMVAEVPEKVIEKMKAQVPMGRLGKPEDIAN--AYLFLASHESDYVNGHVLHVDGGIMM |
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General information:
TITO was launched using:
| RESULT:
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Template: 4NBU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -137846 for 2027 contacts (-68.0/contact) +
2D Compatibility (PS) -25634 + (NN) -7639 + (LL) 820
1D Compatibility (HY) -21200 + (ID) 5800
Total energy: -197299.0 ( -97.34 by residue)
QMean score : 0.566
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