Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSELNLTTDEARVSYGIGRQLGDQLRENPVPGMTLDAVLAGLSDAFAG----IDSRVSGEALSASFQVIRERMQAEAQAKAEAAAGEGRAYLAENAKREGVTVLPSGLQFEVLSTGEGAKPSREDTVRTHYHGTLIDGTVFDSSYQRGQPAEFPVGGVIAGWVEALQLMNAGSKWRLHVPSELAYGGQAV-GSIPPHSVLVFDVELLEIL
1FD9 Chain:A ((9-209))
-------TDKDKLSYSIGADLGKNFKNQGI-DVNPEAMAKGMQDAMSGAQLALTEQQMKDVLNKFQKDLMAKRTAEFNKKADENKVKGEAFLTENKNKPGVVVLPSGLQYKVINSGNGVKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQVSQVIPGWTEALQLMPAGSTWEIYVPSGLAYGPRSVGGPIGPNETLIFKIHLISV-
General information:
TITO was launched using:
RESULT:
Template:
1FD9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58761 for 1308 contacts (-44.9/contact) +
2D Compatibility (PS) -21808 + (NN) -9182 + (LL) 644
1D Compatibility (HY) -16400 + (ID) 4200
Total energy: -109707.0 ( -83.87 by residue)
QMean score : 0.463
(partial model without unconserved sides chains):
PDB file :
Tito_1FD9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1FD9-query.scw
PDB file :
Tito_Scwrl_1FD9.pdb
: