Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLIIPAIDLKDGACVRLRQGLMEDATVFSDDPVAMAAKWVDGGCRRLHLVDLNGAFEGKPVNGEVVTAIARRYPDLPIQIGGGIRSLETIEHYVRAGVSYVIIGTKAVKQPEFVGEACRAFPGKVIVGLDAKDGFVATDGWAEVSEVQVIDLARRFEADGVSAIVYTDISKDGMMQGCNVEATAALANATRIPVIASGGI---HNLGDIQKLLDARTPGII-GAITGRAIYEGTLDVAEAQALCDNFKA
2CFF Chain:A ((1-233))
MLVVPAIDLFRGKVARMIKGRKENTIFYEKDPVELVEKLIEEGFTLIHVVDLSNAIENSGENLPVLEKLSEFAEH--IQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLEDPSFL-KSLREIDVEPVFSLVTRGGRVAFKGWLAEEEIDPVSLLKRLKEYGLEEIVHTEIEKDGTLQEHDFSLTKKIAIEAEVKVLAAGGISSENSLKTAQK-VHTETNGLLKGVIVGRAFLEGILTV------------
General information:
TITO was launched using:
RESULT:
Template:
2CFF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -170141 for 1892 contacts (-89.9/contact) +
2D Compatibility (PS) -25152 + (NN) -14191 + (LL) 1112
1D Compatibility (HY) -19200 + (ID) 4000
Total energy: -231572.0 ( -122.40 by residue)
QMean score : 0.594
(partial model without unconserved sides chains):
PDB file :
Tito_2CFF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2CFF-query.scw
PDB file :
Tito_Scwrl_2CFF.pdb
: