Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKATRLAIPDVILFEPRVFGDDRGFFFESYNQRAFEEACGHPVSFVQDNHSRSARGVLRGLHYQIRQAQGKLVRATLGEVFDVAVDLRRGSPTFGQWVGERLSAENKRQMWIPAGFAHGFVVLSEYAEFLYKTTDFWAPEHERCIVWNDPELKIDWPLQDAPLLSEKDRQGKAFADADCFP
1RTV Chain:A ((4-184))
MKATRLAIPDVILFEPRVFGDDRGFFFESYNQRAFEEACGHPVSFVQDNHSRSARGVLRGLHYQIRQAQGKLVRATLGEVFDVAVDLRRGSPTFGQWVGERLSAENKRQMWIPAGFAHGFVVLSEYAEFLYKTTDFWAPEHERCIVWNDPELKIDWPLQDAPLLSEKDRQGKAFADADCFP
General information:
TITO was launched using:
RESULT:
Template:
1RTV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -94243 for 1420 contacts (-66.4/contact) +
2D Compatibility (PS) -19066 + (NN) -4892 + (LL) 0
1D Compatibility (HY) -24800 + (ID) 9050
Total energy: -152051.0 ( -107.08 by residue)
QMean score : 0.419
(partial model without unconserved sides chains):
PDB file :
Tito_1RTV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RTV-query.scw
PDB file :
Tito_Scwrl_1RTV.pdb
: