Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MATPAYMSITGTKQGLITAGAFTEDSVGNTYQEGHEDQVMVQGFNHEVIIPRDPQSGQPTGQRVHKPVVITKVFDKASPLLLAALTSGERLTKVEIQWYRTSAAGTQEHYYTTVLEDAIIVDIKDYMHNCQDPGNAHFTHLEDVHFTYRKITWTHEVSGTSGSDDWRSPVAG
4HKH Chain:A ((2-157))
-AIPVYLWLKDD------GGADIKGSVDVQDREG---SIEVVAQEHCLYIPTDNNTGKLTGTRIHTPFLFTKEIDSSSPYLYKAVTTGQTLKSAEFKWYKIWDAGQEVEYFNTKLENVKVVKVNPVMHD--------HNHLEQVELRYEKITWTYKDGNIIHSDAW------
General information:
TITO was launched using:
RESULT:
Template:
4HKH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -48573 for 1025 contacts (-47.4/contact) +
2D Compatibility (PS) -16244 + (NN) -6564 + (LL) 716
1D Compatibility (HY) -10800 + (ID) 2750
Total energy: -84215.0 ( -82.16 by residue)
QMean score : 0.459
(partial model without unconserved sides chains):
PDB file :
Tito_4HKH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4HKH-query.scw
PDB file :
Tito_Scwrl_4HKH.pdb
: