Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSPECARAAGDAPLRSLEQANRTRFPFFSDVKGDHRLVLAAVETTVLVLIFAVSLLGNVCALVLVARRRRRGATACLVLNLFCADLLFI-SAIPLVLAVRWTEAWLLGPVACHLLFYVMTLSGSVTILTLAAVSLERMVCIVHLQRGVRGPGRRARAVLLALIWGYS-AVAALPLCVFFRVVPQRLPGADQEISICTLIWPTIPGEISWDVSFV----TLNFLVPGLVIVISYSKILQTSEHLLDARAVVTHSEITKASRKRLTVSLAYSESHQIRVSQQDFRLFRTLFLLMVSFFIMWSPIIITILLILIQNFKQDLVIWPSLFFWVVAFTFANSAL-NPILYNM--TLCRNEWKKIFCCFWFPEKGAILTDTSVKRNDLSIISG |
1F88 Chain:A ((39-346)) | -------------------------------------MLAAYMFLLIMLGFPINFL---TLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRF-GENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCS------CGIDYYT-PHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVK---EAAA----SATTQKAEKEVT---------------------RMVIIMVIAFLICWLPYAGVAFYI----FTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNP-------STTVSKTETSQVAP |
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General information:
TITO was launched using:
| RESULT:
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Template: 1F88.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -261940 for 2330 contacts (-112.4/contact) +
2D Compatibility (PS) -29310 + (NN) -9302 + (LL) 6292
1D Compatibility (HY) -29200 + (ID) 4000
Total energy: -327460.0 ( -140.54 by residue)
QMean score : 0.206
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