Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSQQNTSGDCLFDGVNELMKTLQFAVHIPTFVLGLLLNLLAIHGFSTFLKNRWPDYAATSIYMINLAVFDLLLVLSLPFKMVLSQVQSPF---PSLCTLVECLYFVSMYGSVFTICFISMDRFLAIRYPLLVSHLRSPRKIFGICCT--IWVLVWTGSIPIYSFHG----KVEKYMCFHNMSDDTWSAKVFFPL--EVFGFLLPMGIMGFCCSRSIHILLGR------------------------------RDHTQDWV-----------------QQKACIYSIAASLAVFVVSFLPVHLGFFLQFLVRNSFIVE--CRAKQSISFFLQLSMCFSNVNCCLDVFCYYFVIKEFRMNIRAHRPSRVQLVLQDTTISRG |
4XNV Chain:A ((55-382)) | ------------------------AVYILVFIIGFLGNSVAIWMFVFHMK----PWSGISVYMFNLALADFLYVLTLPALIFYYFNKTDWIFGDAMCKLQRFIFHVNLYGSILFLTCISAHRYSGVVYP---KSLGRLKKKNAICISVLVWLIVVVAISPILFYSGTGVRKNKTITCYDTTSDEYLRSYFIYSMCTTVAMFCVPLVLILGCYGLIVRALIYKMKKYTCTVCGYIYNPEDGDPDNGVNPGTDFKDI----VCPLCGVGKDQFEEVEEPLRRKSIYLVIIVLTVFAVSYIPFHVMKTMNLRARLDFQTPAMCAFNDRVYATYQVTRGLASLNSCVNPILYFLAGDTFRRR--------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4XNV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -266270 for 1958 contacts (-136.0/contact) +
2D Compatibility (PS) -26290 + (NN) -1641 + (LL) 3840
1D Compatibility (HY) -28000 + (ID) 3600
Total energy: -321961.0 ( -164.43 by residue)
QMean score : 0.191
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