Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MEAMKLLNQSQVSEFILLGLTSSQDVEFLLFALFSVIYVVTVLGNLLIIVTVFNTPNLNTPMYFLLGNLSFVD--MTLASFATPKVILNLLKKQKVISFAGCFTQIFLLHLLGGVEMVLLVSMAFDRYVAICKPLHYMTIMNKKVCVLLVVTSWLLGLLHSGFQIPFAVNLPFCGPNVVDSIFCDLPLVTKLAC-IDIYFVQVVIVANSGIISLSC--FIILLI----SYSLILITIKNHSPTGQS-----KARSTLTAHITVVILFFGPC------IFIYIWPFGNHSVDKFLAVFYTI------ITPILNPIIYTLRNKEMKISMKKLWRAFVNSREDT |
| 4J4Q Chain:A ((55-317)) | --------------------------------------------NFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTT--TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRF-GENHAIMGVAFTWVMAL---------ACAAP---PLVGWSRY--IPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIF---THQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKN----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4J4Q.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -202404 for 1677 contacts (-120.7/contact) +
2D Compatibility (PS) -23452 + (NN) -1272 + (LL) 5644
1D Compatibility (HY) -23200 + (ID) 3550
Total energy: -248234.0 ( -148.02 by residue)
QMean score : 0.175
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