Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | METANYTKVTEFVLTGLSQTPEVQLVLFVIFLSFYLFIL-----PGNILIICTISLDPHLTSPMYFLLANLAFLDIWYS----SITAPEMLIDFFVERKIISFDGCIAQLFFLHFAGASEMFLLTVMAFDLYTAICRPLHYATIMNQRLCCILVALSWRGGFIHSIIQVALIVRLPF-CGPNELDSYFCDITQVVRIACANTF--PEELV-----MICSSGLISVVCLIALLMSYAFLLALFKKLSGSGEN---TNRAMSTCYSHITIVVLMF--------GPSIYIYARPFDSFS-LDKVVSVFNTLIFPLRNPIIYTLRNKEVKAAMRKLVTKYILCKEK |
| 2X72 Chain:A ((43-318)) | -------------------------------LAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFV----FGPTGCNLQGFFATLGGEIALWSLVVLAIERYVVVCKPMS----------------NFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSCFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKN---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2X72.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -200100 for 1751 contacts (-114.3/contact) +
2D Compatibility (PS) -24819 + (NN) -10242 + (LL) 6172
1D Compatibility (HY) -8000 + (ID) 1000
Total energy: -237989.0 ( -135.92 by residue)
QMean score : 0.164
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