Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDSGPLWDANPTPRGTLSAPNATTPWLGRDEELAKVEIGVLATVLVLATGGNLAVLLTLGQLGRKRSRMHLFVLHLALTDLAVALFQVLPQLLWDITYRFQGP----DLLCRAVKYLQVLSMFASTYMLLAMTLDRYLAVCHPLR--SLQQPGQSTYLLIAAPWLLAAIFSLPQVFIFSLREVIQGSGVLDCWADFG---FPWGPRAYLTWTTLAIFVLPVTMLTACYSLICHEICKNLKVKTQAWRVGGGGWRTWDRPSPSTLAATTRGLPSRVSSINTISRAKIRTVKMTFVIVLAYIACWAPFFSVQMWSVWDKNAPDEDSTNVAFTISMLLGNLNSCCNPWIYMGFNSHLLPRPLRHLACCGGPQPRMRRRLSDGSLSSRHTTLLTRSSCPATLSLSLSLTLSGRPRPEESPRDLELADGEGTAETIIF |
| 2Y04 Chain:A ((17-285)) | ---------------------------------------LMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLL-VVP---FGATLVVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAK-VIICTVWAISALVSFLPIMMHWWRD--EDPQALKCYQDPGCCDFV-TNRAYAIASSIISFYIPLLIM--------------IFVALRVYREAKEQ---------------SRVMLMR----------EHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRDLV-PDWLFVAFN---WLGYANSAMNPIIYCRSPDFRKAFKRLLA----------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2Y04.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -181761 for 1784 contacts (-101.9/contact) +
2D Compatibility (PS) -25955 + (NN) -13126 + (LL) 7852
1D Compatibility (HY) -26400 + (ID) 3850
Total energy: -243240.0 ( -136.35 by residue)
QMean score : 0.261
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