Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ICDISSGGIRSCQPAAAVRNPTDAPSAECCAALAGADLACLCRYKSVGGMWVRFYKIDVKRAMALPGKCGLTMPANC
2RKN Chain:A ((5-77))
-CGMSQDELNECKPAVSKENPT-SPSQPCCTALQHADFACLCGYKNSP--WLGSFGVDPELASALPKQCGLANAPTC
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41493 for 497 contacts (-83.5/contact) +
2D Compatibility (PS) -7788 + (NN) -5050 + (LL) 164
1D Compatibility (HY) -5600 + (ID) 1600
Total energy: -61367.0 ( -123.47 by residue)
QMean score : 0.438
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: