Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKVRTVGKSAKKFVTGVIHIRATFNNTFINVTDVQGNTLYQTSVGAHGFSGSRKSTPYAAGKASEVAAKTAIEKFGMKVVSVIIRGPGFGTEAAVKALQSCGLTVTSIADKTAISHNGCRLRKKRRV
2ZM6 Chain:K ((11-124))
-----------RQVASGRAYIHASYNNTIVTITDPDGNPITWSSGGVIGYKGSRKGTPYAA-QLAALDAAKKAMAYGMQSVDVIVRGTGAGREQAIRALQASGLQVKSIVDDTPVPHNGCRPKKKF--
General information:
TITO was launched using:
RESULT:
Template:
2ZM6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46886 for 848 contacts (-55.3/contact) +
2D Compatibility (PS) -12865 + (NN) -7195 + (LL) 1000
1D Compatibility (HY) -4800 + (ID) 2550
Total energy: -73296.0 ( -86.43 by residue)
QMean score : 0.552
(partial model without unconserved sides chains):
PDB file :
Tito_2ZM6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2ZM6-query.scw
PDB file :
Tito_Scwrl_2ZM6.pdb
: