Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSTSLIVGLAFFVGFIFSYKLLKKVIKNALNDKRNKSKLTNEEIEKFRRDML--EYYKKSSEKYKKLDEEVNKMMNEAFDKADSIIKHNRKQLDRTLDDNARSYLEKVTDQVEKAIGDLQANTANIAADAVKKIMQEHKDDKRSSEVISSFSRNLNKKLH |
1PAU Chain:A ((46-85)) | ---------------------LRETFRNLKYEVRNKNDLTREEIVELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPKLFIIQACRGTELDCGIE--------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1PAU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 6561 for 148 contacts (44.3/contact) +
2D Compatibility (PS) -3933 + (NN) -111 + (LL) 4512
1D Compatibility (HY) -400 + (ID) 750
Total energy: 5879.0 ( 39.72 by residue)
QMean score : 0.420
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