Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMAHIKEASDTNFSEMYGSLFPSKENGKGTWIDWKAAFKQQKLLEAE-SNVMLLEISYSLLKENQLYKEEVGTKLDNIIKNNQGNVRKGRQIC
2DVY Chain:A ((51-98))
--------------------FPSDENLRDYYIEWQISYARDGKYDYELSRMVRLAHEHGILTYNDIYELLKFADDVKSYLEDKGIRRESTNEE
General information:
TITO was launched using:
RESULT:
Template:
2DVY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 2442 for 198 contacts (12.3/contact) +
2D Compatibility (PS) -4788 + (NN) -2093 + (LL) 1472
1D Compatibility (HY) -3600 + (ID) 650
Total energy: -7217.0 ( -36.45 by residue)
QMean score : 0.023
(partial model without unconserved sides chains):
PDB file :
Tito_2DVY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DVY-query.scw
PDB file :
Tito_Scwrl_2DVY.pdb
: