Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKQFEIVIEPIQTEQYREFTINEYQGAVVVFTGHVREWTK-GVKTEYLEYEAYIPMAEKKLAQIGDEINEKWPGTITSIVHRIGPLQISDIAVLIAVSSPHRKDAYRANEYAIERIKEIVPIWKKEIWEDGSKWQGHQKGNYEEAKREE
2OMD Chain:A ((24-135))
-----------------EYQVPEDCGAQVLFLGIPRNAPEDGGNIEALEYEAYPEMAIKEMEKIRQETIEKFGVKEVFIHHRLGLVKIGEPSFLVLAVGGHREETFKACRYAVDETKKRVPIWKKEIFK--------------------
General information:
TITO was launched using:
RESULT:
Template:
2OMD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -44429 for 770 contacts (-57.7/contact) +
2D Compatibility (PS) -12393 + (NN) -7069 + (LL) 2668
1D Compatibility (HY) -5200 + (ID) 2150
Total energy: -68573.0 ( -89.06 by residue)
QMean score : 0.499
(partial model without unconserved sides chains):
PDB file :
Tito_2OMD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2OMD-query.scw
PDB file :
Tito_Scwrl_2OMD.pdb
: