Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEHRVFTIANFFSSNHDFITGFFVVLTAVLMFFISLG---ASRKMQMVPMGLQNVYESIISAILSVAKDIIGEELARKYFPLAGTIALYVFFSNMIGIIPGFESPTASWSFTLVLALIVFFYYHFEGIRVQGFFKYFAHFAGPVKWLAPFMFPIEIISHFSRIVSLSFRLFGNIKGDDMFLLIMLLLVPWAVPVAPFMVLFFMGILQAFVFMILTYVYLAGAVLTDEGH-
1DDB Chain:A ((1-195))
MDSEV--------SNGSGLGAKHITDLLVFGFLQSSGCTRQELEVLGRELPVQAYWEADLEDELQTDGSQASRSFNQGRIEPDSESQEEIIHNIARHLAQIGDEMDHNIQPTLVRQLAAQFMN--GSLSEEDKRNCLAKALDEVKTAFP----------------------RDMENDKAMLIMTMLLAKKVASHAPSL---LRDVFHTTVNFINQNLFSYVRNLVRNEMD
General information:
TITO was launched using:
RESULT:
Template:
1DDB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -261932 for 1391 contacts (-188.3/contact) +
2D Compatibility (PS) -19592 + (NN) -1192 + (LL) 3688
1D Compatibility (HY) 1200 + (ID) 1450
Total energy: -279278.0 ( -200.77 by residue)
QMean score : 0.162
(partial model without unconserved sides chains):
PDB file :
Tito_1DDB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DDB-query.scw
PDB file :
Tito_Scwrl_1DDB.pdb
: