Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNTEILTIMLVVSVLMGLVGLIAFLWGVKSGQFDDEKRMLESVLYDSASDLNEAILQEKRQKN
3WU2 Chain:M ((14-23))
----ALFVLVPSVFLIILYVQTESQQ-------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3WU2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -4849 for 32 contacts (-151.5/contact) +
2D Compatibility (PS) -995 + (NN) 188 + (LL) 2964
1D Compatibility (HY) -1600 + (ID) 50
Total energy: -4342.0 ( -135.69 by residue)
QMean score : -0.027
(partial model without unconserved sides chains):
PDB file :
Tito_3WU2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3WU2-query.scw
PDB file :
Tito_Scwrl_3WU2.pdb
: