Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRSIKKGPFIDDHLMKKTLKAKEGKDNRPIKTWSRRSTILPEMIGFTYNVHNGRVFVPVYITENHVGYKLGEFAPTRTFKGHKGSVQKKIGK
1IBM Chain:S ((2-83))
-PRSLKKGVFVDDHLLEKVLELNAKGEKRLIKTWSRRSTIVPEMVGHTIAVYNGKQHVPVYITENMVGHKLGEFAPTRTYRGHGKEAK-----
General information:
TITO was launched using:
RESULT:
Template:
1IBM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -31462 for 507 contacts (-62.1/contact) +
2D Compatibility (PS) -9131 + (NN) -5610 + (LL) 384
1D Compatibility (HY) -7200 + (ID) 2650
Total energy: -55669.0 ( -109.80 by residue)
QMean score : 0.550
(partial model without unconserved sides chains):
PDB file :
Tito_1IBM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1IBM-query.scw
PDB file :
Tito_Scwrl_1IBM.pdb
: