Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MWKLALCQTDVVFKYPDANYARIEKAIVEAAKNGADIAVLPEMWNTGYALNEL-AGVADLNGGRTKEFLATLSEKHQIAIIGGSVSISEGTKFSN-TMYAFDKYGGLLSSYKKVHLFQLMNEHLYLEAGNDKNLFRLDGVSCAGFICYDIRFPEWIRKHTSEGSEVIFVSAQWPAERVTQWEQLLIARAIENQTFVVAVNRVGDDPNNHFNGHSLVIDPLGNIVVHGGEEEGNIYAEIDLNLVAETRGIIPV--FTDRRPELY
4IZW Chain:A ((22-279))
--RIALMQHTARPLDPQHNLDLIDDAAARASEQGAQLLLTPLLFGFGYVPSQICAQVSAEQVDAARSRLRGIARDRGIALVW-SLPGPEGPEQRGITAELADEHGEVLASYQKVQLYGPEEKAAFVPGEQPPPVLSWGGRQLSLLVCYDVEFPEMVRAAAARGAQLVLVPTALAGDETSVPGILLPARAVENGITLAYANHCGPEGGLVFDGGSVVVGPAGQPLGELGVEPGLLV--VDLPD---------ADYLQDRRAELH
General information:
TITO was launched using:
RESULT:
Template:
4IZW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -145010 for 2153 contacts (-67.4/contact) +
2D Compatibility (PS) -26596 + (NN) -10422 + (LL) 1128
1D Compatibility (HY) -10800 + (ID) 3250
Total energy: -194950.0 ( -90.55 by residue)
QMean score : 0.469
(partial model without unconserved sides chains):
PDB file :
Tito_4IZW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4IZW-query.scw
PDB file :
Tito_Scwrl_4IZW.pdb
: