Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRIFCGIMSIQAGFIGALAEILSPDSKKNNLFMIPEDLAASSGYLMSLAMVLAGILIICAYRNDFLIFMALILWLFGLIFGLIFTPSYSGFYFRPIVCLISFLMGLFIFTDYTRHQDTGEER
2JP3 Chain:A ((11-40))
--------------------------------YYDWESLQLGGLIFGGLLCIAGIALALSGK------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2JP3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -7265 for 115 contacts (-63.2/contact) +
2D Compatibility (PS) -2978 + (NN) -1943 + (LL) 7244
1D Compatibility (HY) -2400 + (ID) 200
Total energy: -7542.0 ( -65.58 by residue)
QMean score : -0.062
(partial model without unconserved sides chains):
PDB file :
Tito_2JP3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JP3-query.scw
PDB file :
Tito_Scwrl_2JP3.pdb
: