Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLLNEENSFYNVDLLNLLKDSSEAVLPYKRIRFRRNQQILAEGAETDYFYIIEDGVVSMSKN-TCKEDSIINFLGKQECIGPLTLLGGAKSPVNYTTI--SEVSVYQFERKYVLNKFLSSPDVFWQMNALMQSMVTPMLEREGYVNLPS----SEKVLAGLIACGERFGRIESDGSCLIPYYFTQKILGNYLNLARAYVATNLRKLEEDGIIALSPKPWRVNNFEIHKQKLKENHEPYI
2XKO Chain:A ((11-213))
-----------------MFRELGSGKLPLQIEQFERGKTIFFPGDPAERVYLLVKGAVKLSRVYESGEEITVALLRENSVFGVLSLLTGQRSDRFYHAVAFTPVQLFSVPIEFMQKALIERPEL---ANVMLQGLSSRILQTEMMIETLAHRDMGSRLVSFLLILCRDFGIPSPDG-ITIDLKLSHQAIAEAIGSTRVTVTRLLGDLRESKLIAIHKKRITVFN----------------
General information:
TITO was launched using:
RESULT:
Template:
2XKO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -111426 for 1410 contacts (-79.0/contact) +
2D Compatibility (PS) -21124 + (NN) -9258 + (LL) 2764
1D Compatibility (HY) -16400 + (ID) 2050
Total energy: -157494.0 ( -111.70 by residue)
QMean score : 0.443
(partial model without unconserved sides chains):
PDB file :
Tito_2XKO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2XKO-query.scw
PDB file :
Tito_Scwrl_2XKO.pdb
: