Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPNHIVLYQPEIPANTGNISRTCAGTDTYLHLIRPLGFSTDDKMLKRAGLDYWDNVKLSYYDSLDEFF--EKNEGGEFYYITKFGRHVYSDIDYSDTNKDYFFVFGKETTGLPDALLQE-NEENCLRIPMTDHIRSLNLSNTAAILAYEALRQQNFGALLQEPNYDRKIFQD
3E5Y Chain:A ((3-152))
---NVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAQMRVHRDWDAFVAAEAPDPARMFAFTTRGSGRFHDRAFEPGD---WFVFGAETRGLAPALVDRFAPEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQAGF----------------
General information:
TITO was launched using:
RESULT:
Template:
3E5Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -81621 for 1083 contacts (-75.4/contact) +
2D Compatibility (PS) -16163 + (NN) -8049 + (LL) 956
1D Compatibility (HY) -12400 + (ID) 3200
Total energy: -120477.0 ( -111.24 by residue)
QMean score : 0.455
(partial model without unconserved sides chains):
PDB file :
Tito_3E5Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3E5Y-query.scw
PDB file :
Tito_Scwrl_3E5Y.pdb
: