Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKRFKKVGIVSAVLVMALSLAACGGGKDTSKSGSSDEKTLTVSVDAGYKDYVNKIKGDFEKDNDVKVKVVEKDMFETLEALPLDGPAGTAPDVMMSAFDRIGSLGQQGHLAEVK-LGNKDDYDEKDQKQVTIDDKIYGAPAIIETLVLYYNKDLLDKAPATFKDLETLSK--DSRFAFTSEKGKNTGFLAKWTDFYFSYGLLAGYGGYVF--GDEGTNPKDIGLNNKGSVEGITYATKWFQDVWPKGMQDNKSADDFIQDQFVKGKAAAILGGPWSAANYKEAKINYGVAKIPTLNNGKEYSPFAGGKGWVVSNYSKNKDVAQKWL-DYVTNQKNQETLYDMTNEVPANLKARDTAKSKNDELTNAVIEQYKNAQPMPNIPEMSEVWTGAENLMFDAASGSKTPQQSADDAVKVIEDNVTQKYTK |
| 2GHA Chain:A ((2-373)) | ------------------------------------QPKLTIWCSEKQVDILQKLGEEFKAKYGVEVEVQYVNFQDIKSKFLTAAPEGQGADIIVGAHDWVGELAVNGLIEPIPNFSDLKNFYETALNAFSYGGKLYGIPYAMEAIALIYNKDYVPEPPKTMDELIEIAKQIDEEFG-----GEVRGFITSAAEFYYIAPFIFGYGGYVFKQTEKGLDVNDIGLANEGAIKGV----KLLKRLVDEGILDPSDNYQIMDSMFREGQAAMIINGPWAIKAYKDAGIDYGVAPIPDLEPGVPARPFVGVQGFMVNAKSPNKLLAIEFLTSFIAKKETMYRIYLGDPRLPSRKDVLELVKDNPDVVGFTL--SAANGIPMPNVPQMAAVWAAMNDALNLVVNGKATVEEALKNAVERIKAQI------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 2GHA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -65000 for 3248 contacts (-20.0/contact) +
2D Compatibility (PS) -39476 + (NN) -17398 + (LL) 3388
1D Compatibility (HY) -28800 + (ID) 5200
Total energy: -152486.0 ( -46.95 by residue)
QMean score : 0.466
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