Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYNKVIMIGRLTAKPEMVKTPTDKSVTRATVAVNRRFKGSNGERE--ADFINVVMWG-RLAETLASYGTKGSLISVDGELRTRKYE-KDGQTHYITEVLASSF----QLLESRSQRAMRENNISGDLSDLVLEEEELPF
3PGZ Chain:A ((27-136))
--NKVILIGNLGADPEIRRLNSGDQVANLRIATSESWRD----RKERTEWHNIVIFNENLVKVVEQYLKKGSKIYIEGQLQTRKWQDQNGNDRYTTEIVLQKYRGELQMLD----------------------------
General information:
TITO was launched using:
RESULT:
Template:
3PGZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37117 for 589 contacts (-63.0/contact) +
2D Compatibility (PS) -10765 + (NN) -3167 + (LL) 1912
1D Compatibility (HY) -8800 + (ID) 1600
Total energy: -59537.0 ( -101.08 by residue)
QMean score : 0.492
(partial model without unconserved sides chains):
PDB file :
Tito_3PGZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3PGZ-query.scw
PDB file :
Tito_Scwrl_3PGZ.pdb
: