Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDPKKIARINELSKKKKTVGLTGEEKVEQAKLREEYIEGFRRSVRHHVEGIKLVDDEGNDVTPEKLRQVQREKGLHGRSLDDPNS
1Y96 Chain:B ((49-74))
------------------ESLESQEQRARAALRERYLRSLLAMV-----------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1Y96.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 3768 for 99 contacts (38.1/contact) +
2D Compatibility (PS) -2907 + (NN) -630 + (LL) 2796
1D Compatibility (HY) -1600 + (ID) 400
Total energy: 1027.0 ( 10.37 by residue)
QMean score : 0.489
(partial model without unconserved sides chains):
PDB file :
Tito_1Y96.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Y96-query.scw
PDB file :
Tito_Scwrl_1Y96.pdb
: