Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIGDKLKGTVTGIRPYGAFVSLED--GRTGLIHISEIKTGYIDNIYDVLSVGDEVYVQVIDVDEFTQKASLSLR--TLEEERHHIQH--RHRFSNNRLKIGFKPLEENLPSWVEEGLAYLNNK
1YZ6 Chain:A ((12-114))
---GEFVVATVKRIHNYGAFLELDEYPGKEAFMHISEVASTWVRNIRDYLKEGQKVVAKVIRVDPRKGHIDLSLRRVTQQQRKAKLQEFKRAQKAENLLKLAAEKLGKDFETAWREVWVPLEEE
General information:
TITO was launched using:
RESULT:
Template:
1YZ6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -36350 for 597 contacts (-60.9/contact) +
2D Compatibility (PS) -9902 + (NN) -289 + (LL) 476
1D Compatibility (HY) -8000 + (ID) 1750
Total energy: -55815.0 ( -93.49 by residue)
QMean score : 0.403
(partial model without unconserved sides chains):
PDB file :
Tito_1YZ6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YZ6-query.scw
PDB file :
Tito_Scwrl_1YZ6.pdb
: