Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEYDQINSYLVDIFNRIMIIEEMSLKTSQFSDVSLKEMHTIEIIGKHSE--VTPSDVARELMLTLGTVTTSLNKLEKKGYIERKRSSIDRRVVHLSLTKRG-RLLDRLHSKF---HKSMVSHIIEDLGEEDIKMLTSALGNLHKFLEDLV
4L9V Chain:A ((28-139))
-------------------------------DITNEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLVEAFTSIFDEMEQTLVSQLSEEENEQMKANLTKMLSSLQ-------
General information:
TITO was launched using:
RESULT:
Template:
4L9V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32579 for 615 contacts (-53.0/contact) +
2D Compatibility (PS) -10968 + (NN) -3854 + (LL) 3748
1D Compatibility (HY) -4800 + (ID) 1650
Total energy: -50103.0 ( -81.47 by residue)
QMean score : 0.499
(partial model without unconserved sides chains):
PDB file :
Tito_4L9V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4L9V-query.scw
PDB file :
Tito_Scwrl_4L9V.pdb
: