Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MAQSLNKTVEFQTTGVSYLGMGNKVGKFLVGDQALEFYNDKNV------NDYIQIPWTSINQIGANVSRKKISRHFEVFTDQGKFLFASKDSGTILKHARRHIGDDKVVKLPTLIQTILKIFKFKK |
1PDJ Chain:D ((22-112)) | -AWSNNRFVELAAT-ITTLTMRDSL--YGRNEGMLQFYDSKNIHTKMDGNEIIQISVANANDINNVKTRIYGCKHFSVSVDSKGDNIIAIELGTIHSIENLKFGRPFFPDAGESIKEMLGVIYQDR |
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General information:
TITO was launched using:
| RESULT:
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Template: 1PDJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 245121 for 3081 contacts (79.6/contact) +
2D Compatibility (PS) -7592 + (NN) 3701 + (LL) -72
1D Compatibility (HY) -1200 + (ID) 600
Total energy: 239358.0 ( 77.69 by residue)
QMean score : ?
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