Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKVVFLKILVPLVSLVFLISLGITILAGVLGAVGGSQSNCTIEVVTSTSTDSSISSGDGSIDSFVKEHKEAYILSWKAGGFLPSASITQTMIENGFNFTNPNGTSLWQAHNMGGVKTSSKSNFPVTLATYGQDSVDLSGTKPGARVGDGTGGAYTWFSSYDAGIVGKAEFMAHQTLYTKAINNIDGIATLSAIADGGWATDGTYKTKLIDMYHKLGKTYEWLDKEAISAHGDKPYKATTASAGDAGLS-DIFTSNSKD-CSDSSSGGATDGTGTVPADAI---AWGYRPDNLPESL---KQYIIDPKSLGMAYANSSGWFNPGSDYLAGQCVNLTISLGNHLWGHSGSVSGNGKDQAGAWANIFGNSVKTTPKRGAIFSTQNGGGGYGHTGIVCHVFENGSILIVEQNTPLSGADYFKKSYTWNYRIWTPAQQKAEVISFAYPYGKEPKLGN |
| 1LZ6 Chain:A ((41-114)) | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RATNYNAGDRSTDYGIFQINSRYWCNDGKTPGAVTGRGDSPANACHLSCSALLQDNIADAVACAKRVVRDPQGIRAWVAWRNRCQNRDVRQYVQGCGV----------------------------------------------------------------------------------------------------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1LZ6.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) 8397 for 354 contacts (23.7/contact) +
2D Compatibility (PS) -7120 + (NN) -6573 + (LL) 15504
1D Compatibility (HY) -2400 + (ID) 1150
Total energy: 6658.0 ( 18.81 by residue)
QMean score : 0.244
|
|
|