Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKLIAIDMDGTLLNDE-KKIPKENIQAIKEATQAGIKIVLCTGRPMSGILPYFNELGLTKEEYIIMNNGCSTYSTKDWQLIDSATLTHDELIFLEEVVKEFPNVC------------LTLTAENTFYAVGEEVPEIVAYDADLVFTKAKSTSLDALRNQEEIVFQAMYMGLDADVTAFQEAVEE---ALISKFSGVRSQDYIYEIMPQGVTKARGLKSLIAKLGLDINQVMAIGDAPNDIELLDLVPNSVAMGNASDEIKSRCKYITVDNNKAGVAKAIYDYALR
3R4C Chain:A ((11-267))
MIKVLLLDVDGTLLSFETHKVSQSSIDALKKVHDSGIKIVIATGRAASDL----HEIDAVPYDGVIALNGAECV-LRDGSVIRKVAIPAQDFRKSMELAREFDFAVALELNEGVFVNRLTPTVEQIAGIVEHPVPPVV--DIEEMFERKECCQL------------CFY---------FDEEAEQKVMPLLSGLSATRWHPLFADVNVAGTSKATGLSLFADYYRVKVSEIMACGDGGNDIPMLKAAGIGVAMGNASEKVQSVADFVTDTVDNSGLYKALKHFGVI
General information:
TITO was launched using:
RESULT:
Template:
3R4C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -147846 for 1977 contacts (-74.8/contact) +
2D Compatibility (PS) -26124 + (NN) -11021 + (LL) 2300
1D Compatibility (HY) -14800 + (ID) 3800
Total energy: -201291.0 ( -101.82 by residue)
QMean score : 0.520
(partial model without unconserved sides chains):
PDB file :
Tito_3R4C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3R4C-query.scw
PDB file :
Tito_Scwrl_3R4C.pdb
: