Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKTYRVKSDKDFQMIFSRGKNVANRKFVIYY---LEKEQKHFRVGISVSKKLGNAVVRNAIKRKIRHVLLSQKTALQDYD---FVVIA---RKGVEELNYQALEKNLIHVLKIAGLI
4AGF Chain:A ((25-105))
-----------------------------LSYAVNIVAALAIIIVGLIIARMISNAVNRLMISRKIDATVADFLSALVRYGIIAFTLIAALGRVGVQ-------TASVIAVLGAAGLA
General information:
TITO was launched using:
RESULT:
Template:
4AGF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -6698 for 360 contacts (-18.6/contact) +
2D Compatibility (PS) -7531 + (NN) -4699 + (LL) 2876
1D Compatibility (HY) -6800 + (ID) 1300
Total energy: -24152.0 ( -67.09 by residue)
QMean score : 0.224
(partial model without unconserved sides chains):
PDB file :
Tito_4AGF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4AGF-query.scw
PDB file :
Tito_Scwrl_4AGF.pdb
: