Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MIKKNKVFLGVLLVLVVILGGGVLFYQSQFQKTTNQALAIAYKDAKVAKKDVIHQKIDKEFENFRGSYEIEFNTKSAEYSYHVDAKTGQILERDMDNNGFSKSTSQSSSSSSQKSHKISQEEAKKIAFKDANIEESEVSNLKIKEEI-----ENGKSVYDIDFVDLKNKNEVDYQIDAETGKIIERSRDHMND |
2GD4 Chain:H ((15-112)) | ----------------------------------------------------------------------------------------QALLINEENEGFCGGTILSEFYILTAAHCLYQAKRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTL |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2GD4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) 48407 for 589 contacts (82.2/contact) +
2D Compatibility (PS) -9325 + (NN) 2333 + (LL) 7168
1D Compatibility (HY) -2000 + (ID) 1150
Total energy: 45433.0 ( 77.14 by residue)
QMean score : 0.040
|
|
|