Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMIKKNKVFLGVLLVLVVILGGGVLFYQSQFQKTTNQALAIAYKDAKVAKKDVIHQKIDKEFENFRGSYEIEFNTKSAEYSYHVDAKTGQILERDMDNNGFSKSTSQSSSSSSQKSHKISQEEAKKIAFKDANIEESEVSNLKIKEEI-----ENGKSVYDIDFVDLKNKNEVDYQIDAETGKIIERSRDHMND
2GD4 Chain:H ((15-112))----------------------------------------------------------------------------------------QALLINEENEGFCGGTILSEFYILTAAHCLYQAKRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTL


General information:
TITO was launched using:
RESULT:

Template: 2GD4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 48407 for 589 contacts (82.2/contact) +
2D Compatibility (PS) -9325 + (NN) 2333 + (LL) 7168
1D Compatibility (HY) -2000 + (ID) 1150
Total energy: 45433.0 ( 77.14 by residue)
QMean score : 0.040

(partial model without unconserved sides chains):
PDB file : Tito_2GD4.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2GD4-query.scw
PDB file : Tito_Scwrl_2GD4.pdb: