Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTNHKTKKLTVLAIMIALDVFLTPIFRIEGMAFMSSVVNIIAGVIMGPIYALVMALVTAFIRILTQAGVASVAPLAILGAGPGAFLAGWLYQFYAKDWMSWVGEFIGTGIIGALLSAPIMVWFWTWTADGNHEVLAKASAAQSIFLFMPRFIGATIIGGVIALLLLQGLKRVPVFMTIQALFKGEKVK |
2RDD Chain:B ((26-35)) | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------KRTKEHKKLMDS---- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2RDD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -1013 for 28 contacts (-36.2/contact) +
2D Compatibility (PS) -973 + (NN) 24 + (LL) 16096
1D Compatibility (HY) 800 + (ID) 50
Total energy: 14884.0 ( 531.57 by residue)
QMean score : -0.421
|
|
|