Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDAKFDFAKLLVYKAGQFIKSEMQNTFDVEEKSRFDDLVTSLDKKTQKLLIQEIIQHYPDDNILAEE---DDVRSPIAQGNVWVLDPIDGTVNFIVQKDNFAVMLAYYEEGVGQFGIIYDVMADILYSGGGHFDVYANDKKIVPFQECPLERCLL---------GVNSAMYAENDCGIAHLASETLGVRIYGGAGISMAKVMQGKLLAYFSY-IQPWDYAAAKIMGETLGFTLLTLDGEEPNY--------STRQKVMFLPKSKLNLIQSYLTKK
2DDK Chain:A ((20-276))
----FQAAVQLALRAGQIIRKALT---------SAADLVTETDHLVEDLIISELRERFPSHRFIAEEAAASGAKCVLTHSPTWIIDPIDGTCNFVHRFPTVAVSIGFAVRQELEFGVIYHCTEERLYTGRRGRGAFCNGQRLRVSGETDLSKALVLTEIGPKRDPATLKLFLSNMERLLH--AKAHGVRVIGSSTLALCHLASGAADAYYQFGLHCWDLAAATVIIREAGGIVIDTSGGPLDLMACRVVAASTREMAMLIAQALQTIN-------
General information:
TITO was launched using:
RESULT:
Template:
2DDK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -164377 for 1841 contacts (-89.3/contact) +
2D Compatibility (PS) -24688 + (NN) -12904 + (LL) 1756
1D Compatibility (HY) -12800 + (ID) 3050
Total energy: -216063.0 ( -117.36 by residue)
QMean score : 0.472
(partial model without unconserved sides chains):
PDB file :
Tito_2DDK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DDK-query.scw
PDB file :
Tito_Scwrl_2DDK.pdb
: