Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTPQTLRRLDVKKQFIEKIEPFAHRQTLKSKAVNSSKTTMSIQRYNHSGTKIQLRIGY-SKVLIRIFSNGKINLTHYDLFFDREETLEITDAFDNGVYTQDEVDGFIKQAKTFIKQALKGEV
2JU8 Chain:A ((13-65))
----------------ENFEPFMKAMGLPEDLIQKGKDIKGVSEIVHEGKKVKLTITYGSKVIHNEFTLGEECELETMTGEKVKAVVKMEGDNKMVTTFKGIKSVTEFNGDTITNTMTLGDI
General information:
TITO was launched using:
RESULT:
Template:
2JU8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -2069 for 243 contacts (-8.5/contact) +
2D Compatibility (PS) -5480 + (NN) -2402 + (LL) 1544
1D Compatibility (HY) -4000 + (ID) 800
Total energy: -13207.0 ( -54.35 by residue)
QMean score : 0.268
(partial model without unconserved sides chains):
PDB file :
Tito_2JU8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JU8-query.scw
PDB file :
Tito_Scwrl_2JU8.pdb
: