Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNKRILNSQFAVYKNWPSWLLLLFACFMVYLFFFVGLTLGGVGIVLVSSVLYKFSSYTFFEFINLFNNIYGELGTFSFSAFLLLIWVKFVEKRPFSELGFSTKFKRTLWSLIKGWSIGFILFSISVITAYILGGLDFHSYDVSKATIFYVVTLLPFWLIQSGTEELLTRGWLLPLINHRFHLAVAIGVSSTLFGILHLVNAHVTFLSIVSIICSGVLMSLYMIKSGNIWSVAALHGAWNFSQGNLYGIAVSGQKAGASLLHFTVKENAPDWISGGAFGIEGSLISIFVLLAAIIYLLWLIKTEETD |
| 4CAD Chain:C ((8-269)) | --NPKLYFLSTFVVTYILWFTGAYL-----------------------------SFSSTYSGIYMLIMLPGLMAPFIISTILIA-----------KKKDFINRLFNLKLINLKTIPVVFLLMPAVILLSILLSIPFGGSISQFQFSGGDFVPVLFLLLLAATFEELGWRGYAFDSLQSRYSLFKASILFGIFWSLWHFPLIFVNNSYQYEIFNQSIWYGLNFFLSILPMGIII---TWMCLKNR-------KSIILAIIFHFLINLNQELLAITQDTKIIETGVLFLVAAAIILYDKKMFFEK--- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4CAD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -114626 for 1898 contacts (-60.4/contact) +
2D Compatibility (PS) -25100 + (NN) 2797 + (LL) 4780
1D Compatibility (HY) -17200 + (ID) 2000
Total energy: -151349.0 ( -79.74 by residue)
QMean score : 0.113
|
|
|