Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKTILLGLVGLSAMTLAACSNGQSSKETTWDNIKKDGVLKVATPATLYPTSYYDDHK------KLTGYEIDMMKAIAKKLKIKVKFVEVGVAESFTSVDSGKVDVAVNNFDTTPERLKKYNFSQPYKYSVGGMIVRADGSSKITAKDLSDWKGKKAGGGAGTQYMKIAKQQGAEPVIYDNVTNDVYLRDVSTGRTDFIPNDYYTQVIAVKYVTKQYPDIKVKMGDVKYNPTEQG--IVMSKKDKSLKTKIDAAIKDMKKDGSLKKISEKYYAGQDLTKEPAGTDKIPVIKVK |
4YMX Chain:A ((37-258)) | -------------------------------------GVIVMGTSADFPPFEF---HKVEGGKDEIVGFDIDIANAIAKKLGVKLEIKDMDFKGLIPALQAGRVDMVIAGMTPTAERKKSVDFSDLYYDSRQVVVVKND--SPISKFD--DLKVKTIAVQIGTTSEEAAKKIPNVKLKQLNRVSDEFM-DLQNGRCDAI---VVEDTVAKAYL-KEYKDMKILYMD-EINNVENGSAVAVAKGNKSLLDVVNEVIKELKQSGEYDKLVDKWFKQ------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4YMX.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -62202 for 1772 contacts (-35.1/contact) +
2D Compatibility (PS) -23723 + (NN) -11079 + (LL) 3096
1D Compatibility (HY) -15200 + (ID) 3350
Total energy: -112458.0 ( -63.46 by residue)
QMean score : 0.482
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