Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSKKMTINDIAQLSKTSKTTVSFFLNQKFEKMSDETRQRIQEVIDETGYRPSTIARSLNSKKTKLLGVLIGDITNTFSNQIVKGIEHITKQKGYQIIVGNSNYDAKSEEDYIENMLNLGVDGFIIQPTSNFRKYSRILKEKKK-PMVFFDSQLYEHKTSWVKA---NNYDAVYDMTQECLNRGYKKFIMITADTSLLSTRIERASGFMDALKDNGFGY-DTLVIEDDDHSKSDIEDFLKAVVPDKEETLVFAPNCWALPMVFTAMKNLNFDMPR-VGLVGFDNIEWTDFSSPKVSTIVQPAYEEGEQVAQILINRIEGDDSVDNQQIVDCQMFWKESTF |
| 1JFT Chain:A ((2-308)) | -----TIKDVAKRANVSTTTVSHVIN-KTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDAG--EAKADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLE-RNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLGETAFNMLLDRIVNKREEPQSIEVHPRLIERRSVA |
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General information:
TITO was launched using:
| RESULT:
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Template: 1JFT.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -136854 for 2445 contacts (-56.0/contact) +
2D Compatibility (PS) -33384 + (NN) -16508 + (LL) 1080
1D Compatibility (HY) -17200 + (ID) 4150
Total energy: -207016.0 ( -84.67 by residue)
QMean score : 0.606
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