Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MMVLERERFMTESDIKVIKRDGRLVSFDKYKIYTALLKASNKVIKMSPLVEAKLEMIADHVIAEIYNRFKDNIKIYEIQNIVEHKLLEANEYAIAQEYINYRTQRDFERSQATDINFSIGKLINKDQTVVNENANKDSDVFNTQRDLTAGIVGKSIGLKMLPSHVANAHQKGDIHYHDLDYSPYTPMTNCCLIDFKGMLANGFK-IGNAEVESPKSIQTATAQISQIIANVASSQYGGCTADRIDEFLAPYAQLNYQKHLKDAKEWVIEDKQEDYARAKTQKDIYDAMQSLEYEINTLFTSNGQTPFTSLGFGLGTNWF------EREIQKAILKIRIQGLGS-------------EHRTAIFPKLIFTL--KKGLNLEEDSPNYDIKQLALECATKRMYPDVLSYDKIIDLTGSFKAPMGCRSFLQGWRDANGQDVTSGR--------MNLG---VVTVNLPRVAMESNGDMDKFWEIFNERMSIARDALVYRVERVKEAIPANAPILYQYGAFGERLGKYDNVDRLFNHRRATVSLGYIGLYEVASVFYGGDWED------NHQAKAFTVDIVRKMKQLCADWSDEYDYHFSVYSTPSESLTDRFCRLDTEKFGIVTDITDKEYYTNSFHYDVRKNPTPFEKLDFEKIYPETGASGGFIHYCEYPVLQQNPKALEAVWDYAYDRVGYLGTNTPIDKCYQCQ-FEGDFTPTDRGFTCPNCGNSDPKTVDVVKRTCGYLGNPQARPMVNGRHKEISARVKHMNGSSIKNQGN |
| 4U3E Chain:A ((116-643)) | --------------------------------------------------------------------------------------------------------------------------------------------------------------KGVADEFVEAQINGAVYLHDRHHAALMPY--CFAYTLKPIVEKGLPFIKTIKSEPAKHLSTFIQHVIQFVM-FASNQSSGAVG------LPDFFVWMWYFVKKDLKEGIIPRDKLDWY-------IEQHFQILTYSLNQPIRTT-QSPYTNFTY-LDRNYIKAIFEGERYPDGSLITDHVEDIIALQKHYWEWVSRERERQMFTFPVLTASLLYKDGKFLDEDSARF-INKINMKWQDTNWYIS----DSIDAVASC--------------------EKLKGRMNSIGGSDLNIGSFKVITVNLPRIALESGGDREKYLQILRHRVQLIKKALAAVREIIKERISEGLLPLYENGL------------MLLNRQYGTI--GVTGVWESASI-MGLTTEDIDGLKYTEEGEVFVDNVLDTIREEAEKGYHEYGFTFNIEQVPAEKAAVTLAQKDRFLFG---EKQPFEIYSNQW-VPLMANTDVLNRIRYSGKWDKKVSGGAILHINLGESFKTEEESFNMVKMIADMGVMYFAFNTKISVCEDGHAFYGE--------RCPVCGKAK---VDEYMRIVGYLVPVSAFNKERREIEYPRRQFYDSLTIR------ |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4U3E.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) 34989 for 3549 contacts (9.9/contact) +
2D Compatibility (PS) -46301 + (NN) 522 + (LL) 15952
1D Compatibility (HY) 14000 + (ID) 1600
Total energy: 17562.0 ( 4.95 by residue)
QMean score : 0.004
|
|
|