Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSITSVKKSKPFKLGVAGLLVGASLALPLSVSAASYTVKSGDTLSAIAKNHKTTVQELVSLNSISNADVISIGDVLKLDNSKASQAEAKSQPTIENSMNSSSNLSSSDSAAKEEIARRESNGSYTAQNGQYYGRYQLSQSYLNGDLSPENQEKVADNYVVSRYGSWSAALSFWNSNGWY
4PXV Chain:A ((2-47))
--------------------------------CTTYTIKSGDTCYAISQARGISLSDFESWNAGIDCNNLQIGQVVCVS----------------------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4PXV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -15923 for 261 contacts (-61.0/contact) +
2D Compatibility (PS) -4984 + (NN) -2985 + (LL) 6144
1D Compatibility (HY) -3600 + (ID) 700
Total energy: -22048.0 ( -84.48 by residue)
QMean score : 0.596
(partial model without unconserved sides chains):
PDB file :
Tito_4PXV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4PXV-query.scw
PDB file :
Tito_Scwrl_4PXV.pdb
: