Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAALPAPEKLLRSDFPVLWPVGTRWADNDMFGHLNNAVYYQLFDTAINAWINTSTGVDPLAMPVLG-----IVAESGCRYFSELRFPESLMVGLAVTRLGRSSVTYRLGVFKEPDDAGVITALGHWVHVYVDRTSRRPVPIPEAIRSLLSTACVSG
2GF6 Chain:A ((14-133))
-----------------------RIYDTDAQGIAHYAAYYRFFTNTIEKFIKEKVGI---PYPIVNENLWFVIAESHAIYHRPVKLGDKLTVLLNPKILSNKTIKFEFKVLKD----GELTTEGYVIQIAINPKIWKSTEMPKEIMDKLS------
General information:
TITO was launched using:
RESULT:
Template:
2GF6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -74319 for 756 contacts (-98.3/contact) +
2D Compatibility (PS) -12379 + (NN) -5414 + (LL) 1556
1D Compatibility (HY) -8400 + (ID) 1450
Total energy: -100406.0 ( -132.81 by residue)
QMean score : 0.354
(partial model without unconserved sides chains):
PDB file :
Tito_2GF6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GF6-query.scw
PDB file :
Tito_Scwrl_2GF6.pdb
: