Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSTVHSSIDQHPDLLALRASFDRAAESTIAHFTFGLALLAGLYVAASPWIVGFSATRGLPTCDLIVGIAVAYLAYGFASALDRTHGMTWTLPVLGVWVIFSPWVLPGVAVTAGMMWSHIIAGAVVAVLGFYFGMRTRAAANQG
3DQ0 Chain:A ((353-380))
----------------------------------------------------------------------------YAAFLDRVHGEEVALNKLGLWRVPHPWL---------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3DQ0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -7690 for 103 contacts (-74.7/contact) +
2D Compatibility (PS) -2569 + (NN) 1597 + (LL) 8996
1D Compatibility (HY) -2400 + (ID) 600
Total energy: -2666.0 ( -25.88 by residue)
QMean score : -0.145
(partial model without unconserved sides chains):
PDB file :
Tito_3DQ0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DQ0-query.scw
PDB file :
Tito_Scwrl_3DQ0.pdb
: