Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDNSTGTTKSRSNVDDVQAHYDLSDAFFALFQDPTRTYSCAYFERDDMTLHEAQVAKLDLTLGKLGLEPGMTLLDVGCGWGSVMKRAVERYDVNVVGLTLSKNQHAYCQQVLDKVDTNRSHRVLLSDWANFSEPVDRIVTIEAIEHFGFERYDDFFKFAYNAMPADGVMLLHSITGLHVKQVIERGIPLTMEMAKFIRFIVTDIFPGGRLPTIETIEEHVTKAGFTITDIQSLQPHFARTLDLWAEALQAHKDEAIEIQSAEVYERYMKYLTGCAKAFRMGYIDCNQFTLAK
3HA7 Chain:A ((44-313))
-----------------------VSDDFFALFQDPTRTYSCAYFEPPELTLEEAQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYE--ARGKKLSFETARFIKFIVTEIFPGGRLPSTEMMVEHGEKAGFTVPEPLSLRPHYIKTLRIWGDTLQSNKDKAIEV--EEVYNRYMKYLRGCEHYFTDEMLDCSLVTYLK
General information:
TITO was launched using:
RESULT:
Template:
3HA7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -202345 for 2182 contacts (-92.7/contact) +
2D Compatibility (PS) -28792 + (NN) -10623 + (LL) 1052
1D Compatibility (HY) -29600 + (ID) 8300
Total energy: -278608.0 ( -127.68 by residue)
QMean score : 0.649
(partial model without unconserved sides chains):
PDB file :
Tito_3HA7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3HA7-query.scw
PDB file :
Tito_Scwrl_3HA7.pdb
: