Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRTTVSISDEILAAAKRRARERGQSLGAVIEDALRREFAAAHVGGARPTVPVFDGGTGPRRGIDLTSNRALSEVLDEGLELNSRK
4CD1 Chain:A ((88-144))
----------------------GQSLVRCLEQALRDVPRDRHA-----STPLYLGATAGMRLLNLTSPEATARVLE---------
General information:
TITO was launched using:
RESULT:
Template:
4CD1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -6443 for 209 contacts (-30.8/contact) +
2D Compatibility (PS) -5106 + (NN) 1239 + (LL) 2508
1D Compatibility (HY) -2400 + (ID) 950
Total energy: -11152.0 ( -53.36 by residue)
QMean score : 0.317
(partial model without unconserved sides chains):
PDB file :
Tito_4CD1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4CD1-query.scw
PDB file :
Tito_Scwrl_4CD1.pdb
: